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  • Overview
  • publisher
    • Introduction
    • Getting Started
      • Logging in to Publisher
    • Data Sources
      • Connecting a Data Source
      • Managing a Data Source
      • Connectors
        • AWS S3 Permissions
        • Connecting to AWS S3 Storage
        • Google Cloud Storage (GCS) Permissions
        • Connecting to Google Cloud Storage
        • PostgreSQL Permissions
        • Connecting to PostgreSQL
        • PostgreSQL on Azure Permissions
        • Microsoft Azure Blob Storage Permissions
        • Connecting to Microsoft Azure Blob Storage
        • Connecting to HTTPS
        • Connecting to other sources via Trino
          • BigQuery
    • Collections
      • Creating a Collection
      • Sharing a Collection
      • Collection Filters
      • Editing Collection Metadata
      • Updating Collection Contents
    • Access Policies
      • Creating an Access Policy
      • Managing Access Policies
    • Questions
      • Adding Questions
      • Example Question
    • Settings
      • Viewing Current and Past Administrators
      • Adding an Administrator
      • Removing an Administrator
      • Setting Notification Preferences
  • Explorer
    • Introduction
    • Viewing a Collection
    • Browsing Collections
    • Asking Questions
    • Accessing a Private Collection
      • Requesting Access to a Private Collection
    • Filtering Data in Tables
      • Strings
      • Dates
      • Numbers
  • Workbench
    • Introduction
    • Getting Started
      • Logging into Workbench
      • Connecting an Engine
      • Finding or Importing a Workflow
      • Configuring Workflow Inputs
      • Running and Monitoring a Workflow
      • Locating Outputs
    • Engines
      • Adding and Updating an Engine
        • On AWS HealthOmics
        • On Microsoft Azure
        • On Google Cloud Platform
        • On Premises
      • Parameters
        • AWS HealthOmics
        • Google Cloud Platform
        • Microsoft Azure
        • On-Premises
        • Cromwell
        • Amazon Genomics CLI
    • Workflows
      • Finding Workflows
      • Adding a Workflow
      • Supported Languages
      • Repositories
        • Dockstore
    • Instruments
      • Getting Started with Instruments
      • Connecting a Storage Account
      • Using Sample Data in a Workflow
      • Running Workflows Using Samples
      • Monitor the Workflow
      • CLI Reference
        • Instruments
        • Storage
        • Samples
        • OpenAPI Specification
    • Entities
    • Terminology
  • Passport
    • Introduction
    • Registering an Email Address for a Google Identity
  • Command Line Interface
    • Installation
    • Usage Examples
    • Working with JSON Data
    • Reference
      • workbench
        • runs submit
        • runs list
        • runs describe
        • runs cancel
        • runs delete
        • runs logs
        • runs tasks list
        • runs events list
        • engines list
        • engines describe
        • engines parameters list
        • engines parameters describe
        • engines health-checks list
        • workflows create
        • workflows list
        • workflows describe
        • workflows update
        • workflows delete
        • workflows versions create
        • workflows versions list
        • workflows versions describe
        • workflows versions files
        • workflows versions update
        • workflows versions delete
        • workflows versions defaults create
        • workflows versions defaults list
        • workflows versions defaults describe
        • workflows versions defaults update
        • workflows versions defaults delete
        • namespaces get-default
        • storage add
        • storage delete
        • storage describe
        • storage list
        • storage update
        • storage platforms add
        • storage platforms delete
        • storage platforms describe
        • storage platforms list
        • samples list
        • samples describe
        • samples files list
      • publisher
        • datasources list
  • Analysis
    • Python Library
    • Popular Environments
      • Cromwell
      • CWL Tool
      • Terra
      • Nextflow
      • DNAnexus
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  1. Workbench
  2. Workflows

Repositories

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Last updated 3 months ago

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repositories play a pivotal role in promoting reproducibility, scalability, and ease of access in bioinformatics and computational analyses. They offer a centralized platform to share, access, and manage workflows. With the integration of these repositories, platforms like Workbench ensure that users can access a vast array of tools and pipelines, both public and private, to suit their analytical needs.

Dockstore

Workbench integrates with , a platform dedicated to the sharing of analytical tools and workflows. With this integration, Workbench users can access and leverage the vast collection of public workflows shared by the global community.

Workflow
Dockstore