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  • Overview
  • publisher
    • Introduction
    • Getting Started
      • Logging in to Publisher
    • Data Sources
      • Connecting a Data Source
      • Managing a Data Source
      • Connectors
        • AWS S3 Permissions
        • Connecting to AWS S3 Storage
        • Google Cloud Storage (GCS) Permissions
        • Connecting to Google Cloud Storage
        • PostgreSQL Permissions
        • Connecting to PostgreSQL
        • PostgreSQL on Azure Permissions
        • Microsoft Azure Blob Storage Permissions
        • Connecting to Microsoft Azure Blob Storage
        • Connecting to HTTPS
        • Connecting to other sources via Trino
          • BigQuery
    • Collections
      • Creating a Collection
      • Sharing a Collection
      • Collection Filters
      • Editing Collection Metadata
      • Updating Collection Contents
    • Access Policies
      • Creating an Access Policy
      • Managing Access Policies
    • Questions
      • Adding Questions
      • Example Question
    • Settings
      • Viewing Current and Past Administrators
      • Adding an Administrator
      • Removing an Administrator
      • Setting Notification Preferences
  • Explorer
    • Introduction
    • Viewing a Collection
    • Browsing Collections
    • Asking Questions
    • Accessing a Private Collection
      • Requesting Access to a Private Collection
    • Filtering Data in Tables
      • Strings
      • Dates
      • Numbers
  • Workbench
    • Introduction
    • Getting Started
      • Logging into Workbench
      • Connecting an Engine
      • Finding or Importing a Workflow
      • Configuring Workflow Inputs
      • Running and Monitoring a Workflow
      • Locating Outputs
    • Engines
      • Adding and Updating an Engine
        • On AWS HealthOmics
        • On Microsoft Azure
        • On Google Cloud Platform
        • On Premises
      • Parameters
        • AWS HealthOmics
        • Google Cloud Platform
        • Microsoft Azure
        • On-Premises
        • Cromwell
        • Amazon Genomics CLI
    • Workflows
      • Finding Workflows
      • Adding a Workflow
      • Supported Languages
      • Repositories
        • Dockstore
    • Instruments
      • Getting Started with Instruments
      • Connecting a Storage Account
      • Using Sample Data in a Workflow
      • Running Workflows Using Samples
      • Family Based Analysis with Pedigree Information
      • Monitor the Workflow
      • CLI Reference
        • Instruments
        • Storage
        • Samples
        • OpenAPI Specification
    • Entities
    • Terminology
  • Passport
    • Introduction
    • Registering an Email Address for a Google Identity
  • Command Line Interface
    • Installation
    • Usage Examples
    • Working with JSON Data
    • Reference
      • workbench
        • runs submit
        • runs list
        • runs describe
        • runs cancel
        • runs delete
        • runs logs
        • runs tasks list
        • runs events list
        • engines list
        • engines describe
        • engines parameters list
        • engines parameters describe
        • engines health-checks list
        • workflows create
        • workflows list
        • workflows describe
        • workflows update
        • workflows delete
        • workflows versions create
        • workflows versions list
        • workflows versions describe
        • workflows versions files
        • workflows versions update
        • workflows versions delete
        • workflows versions defaults create
        • workflows versions defaults list
        • workflows versions defaults describe
        • workflows versions defaults update
        • workflows versions defaults delete
        • namespaces get-default
        • storage add
        • storage delete
        • storage describe
        • storage list
        • storage update
        • storage platforms add
        • storage platforms delete
        • storage platforms describe
        • storage platforms list
        • samples list
        • samples describe
        • samples files list
      • publisher
        • datasources list
  • Analysis
    • Python Library
    • Popular Environments
      • Cromwell
      • CWL Tool
      • Terra
      • Nextflow
      • DNAnexus
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On this page
  • Overview
  • Managing Data Sources
  • Accessing Data Sources
  • Viewing and Organizing
  • Connection Status
  • Next Steps

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  1. publisher

Data Sources

Overview

Data Sources establish connections between Publisher and external data repositories. These connections allow Publisher to interact with data stored across various platforms:

  • Cloud Storage: Azure Blob Storage, AWS S3, Google Cloud Storage

  • Databases: PostgreSQL, BigQuery

  • Other supported data repositories

Managing Data Sources

Accessing Data Sources

  1. Log in to Publisher

  2. Click "Data Sources" in the navigation sidebar

  3. View the Data Sources page with your connected repositories

Viewing and Organizing

The Data Sources page displays a table of your connections with the following features:

  • Default sorting by "Created On" (most recent first)

  • Customizable sorting by clicking any column header in the table

  • Search functionality for quick source location

Connection Status

Data Sources display one of three status indicators:

Status
Description

CONNECTED

Active and functioning connection

DISCONNECTED

Connection currently inactive

INTERMITTENT

Unstable or inconsistent connection

Next Steps

After reviewing your Data Sources, you can:

  • Connect new data sources to expand your library

  • Monitor existing connections through their status indicators

  • Use connected sources to create and manage Collections

For detailed instructions on connecting specific data sources, refer to the corresponding guides in the left navigation menu.

PreviousLogging in to PublisherNextConnecting a Data Source

Last updated 4 months ago

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