On-Premises

When running on-premises, Workbench integrates Cromwell execution engine with DNAstack's WES service. This combination enables workflow execution on your infrastructure, whether local servers or cloud providers.

The WES service supports all standard Cromwell parameters, documented in the Cromwell documentation. Additionally, it standardizes the DELETE_INTERMEDIATE_OUTPUT_FILES parameter across all supported infrastructure types, allowing consistent intermediate file cleanup when running workflows through Workbench.

Available Parameters

delete_intermediate_output_files=BOOLEAN

Specifies whether to delete intermediate output files. Default is false. If set to true, any File variables referenced in task output sections that are not found in the workflow output section will be considered an intermediate File. Additionally, log files will not be deleted.