Running Workflows Using Samples

Effortlessly launch an analysis workflow from your connected Instrument data and monitor the outputs in just a few clicks.

Select Storage Account from Data Page

1. Navigate to the Data page in the left sidebar.

2. Select the connected storage account containing your sequencing data.

Select Samples

1. View the indexed list of samples.

2. Select one or more samples by clicking the checkbox next to the Sample ID.

3. Click Run Workflow.

Select the Sample-Enabled Workflow

1. Choose a secondary or tertiary workflow from the available options (e.g., HiFi-human-WGS-WDL). If you only have one workflow available, this will be pre-selected. If you choose a tertiary workflow, clicking on the submit button will automatically launch the secondary workflow

2. Select the compute engine (e.g., Cromwell on GCP, AWS Singapore).

3. Review the workflow configuration.

Submit the Workflow

1. Click Submit to start the analysis.

2. Monitor the progress directly in the Workbench UI.