samples files list

List files for a sample

Synopsis

List Sample Files

omics alpha samples files list --sample-id=SAMPLE_ID
[--max-results=NUMBER]
[--page=NUMBER]
[--page-size=NUMBER]
[--sort=SORT_STRING]
[--platform=STRING]
[--platform-type=PLATFORM_TYPE]
[--storage=STRING]
[--instrument=STRING]
[--search=STRING]

Description

List files associated with a given sample ID. This command retrieves files and their details for the specified sample, allowing you to filter and sort the results.

Examples

List all files for a specific sample:

omics alpha samples files list --sample-id sample-123

List files for a specific sample with pagination and sorting:

omics alpha samples files list --sample-id sample-123 --page 2 --page-size 5 --sort creation_date:DESC

Flags

--sample-id=STRING

The ID of the sample for which the files will be listed. This flag is required.

--namespace=STRING

An optional flag to define the namespace to connect to. By default, the namespace is extracted from the user's credentials.

--max-results=NUMBER

Limit the maximum number of results printed to the console.

--page=NUMBER

Used to set the offset page number. This allows for jumping to an arbitrary page of results.

--page-size=NUMBER

Used to set the number of results returned per page (default 100).

--sort=SORT_STRING

Used to sort the files by a set of given properties and directions. The SORT_STRING consists of multiple properties to order by, in the form column(:direction)?(;(column(:direction)?)*. The direction of the ordering is optional, and if it is omitted, the default ordering is ascending.

Valid Directions: ASC, DESC

Examples: created_at:ASC

--platform=STRING

Filter the files by the platform ID that generated them.

--platform-type=PLATFORM_TYPE

Filter the files by the platform type

--storage=STRING

Filter the files by their storage ID.

--instrument=STRING

Filter the files by the instrument ID that generated them.

--search=STRING

Search for files that contain the specified string in their path.