workflows versions dependencies update

Update an existing workflow dependency

Synopsis

omics workbench workflows versions dependencies update
  --workflow=WORKFLOW_ID
  --version=VERSION_ID
  --name=DEPENDENCY_NAME
  --dependency=DEPENDENCY_SPEC [--dependency=DEPENDENCY_SPEC ...]
  DEPENDENCY_ID
  [--global]
  [--namespace=NAMESPACE]

Description

Update an existing workflow dependency by modifying its name and prerequisite workflows. This command allows you to change the dependencies and metadata of an existing workflow dependency while preserving its ID and creation timestamp.

Dependency specifications follow the same format as the create command:

• workflow-id/version-id - Specifies an explicit version

• workflow-id - Automatically resolves to the latest version

Examples

Update a dependency's name and prerequisites:

omics workbench workflows versions dependencies update \
  --workflow 40c67272-3553-4bb1-8662-81c81acff347 \
  --version latest \
  --name "Updated preprocessing pipeline" \
  --dependency "5633fe10-b66a-4a20-8258-9963e4cac6fa/v2.0" \
  5a0082d1-84d8-409a-8cea-5fbde03a0c68

Update a dependency with multiple new prerequisites:

omics workbench workflows versions dependencies update \
  --workflow 40c67272-3553-4bb1-8662-81c81acff347 \
  --version v2.0 \
  --name "Enhanced analysis pipeline" \
  --dependency "data-validation/v1.3" \
  --dependency "quality-metrics" \
  --dependency "normalization/v2.1" \
  5a0082d1-84d8-409a-8cea-5fbde03a0c68

Update a dependency with global administrative privileges:

omics workbench workflows versions dependencies update \
  --workflow 40c67272-3553-4bb1-8662-81c81acff347 \
  --version latest \
  --name "System-wide dependency" \
  --dependency "global-init/v1.0" \
  --global \
  5a0082d1-84d8-409a-8cea-5fbde03a0c68

Flags

--workflow=WORKFLOW_ID

Required. Specify the UUID of the workflow containing the dependency you want to update.

--version=VERSION_ID

Required. Specify the version ID of the workflow containing the dependency you want to update.

--name=DEPENDENCY_NAME

Required. The new human-readable name for the dependency.

--dependency=DEPENDENCY_SPEC

Required. Specify updated dependencies in the format workflow-id/version-id or workflow-id. When only the workflow ID is provided, the system automatically resolves to the latest available version. This flag can be specified multiple times to define multiple prerequisites.

DEPENDENCY_ID

Required. The ID of the dependency to update.

--global

Update a global dependency that applies across all namespaces. This flag requires administrator privileges and adds the X-Admin-Only-Action header to the request.

--namespace=NAMESPACE

An optional flag to define the namespace to connect to. By default, the namespace is extracted from the user's credentials.