collections items remove

Remove files from a collection

Synopsis

omics publisher collections items remove
  --collection=COLLECTION_ID
  --datasource=DATASOURCE_ID
  --files=FILE|@FILE|STDIN

Description

Remove files from a collection. Files can be specified as a comma-separated list, loaded from a file, or piped via stdin. After removing files, the collection will begin validation to update the collection's contents.

Examples

Remove files using a comma-separated list.

omics publisher collections items remove \
  --collection my-collection \
  --datasource my-bucket \
  --files 'gs://bucket/file1.vcf,gs://bucket/file2.vcf'

Load files to remove from a text file.

omics publisher collections items remove \
  --collection my-collection \
  --datasource my-bucket \
  --files @files.txt

Pipe files from stdin.

cat files.txt | omics publisher collections items remove \
  --collection my-collection \
  --datasource my-bucket \
  --files -

Flags

--collection=COLLECTION_ID

The ID or slug name of the collection to remove files from.

--datasource=DATASOURCE_ID

The ID of the data source where the files or folders reside, such as a bucket or storage location.

--files=FILE|@FILE|STDIN

Specifies the files to be removed. Accepts:

• A comma-separated list of file URLs (e.g., 'file1.vcf,file2.vcf')

• A file path prefixed with @ (e.g., @files.txt)

• Files piped via stdin (use - as the value)

Files can also be separated by newlines when loaded from a file or stdin.