The Data Page

The Data Page is where you find the sample to interpret. It is the entry point to the Variant Interpreter, reached by selecting an instrument, and lists every sample for that instrument.

Selecting an instrument

The Data Page is scoped to an instrument. Choose the instrument whose samples you want to work with; the sample list then loads for that instrument.

The sample list

Each row is a sample. The list shows:

• Sample name: the identifier you use to locate the proband or a family member.

• Movies: the number of PacBio CCS files available for the sample.

• Date Added: when the sample was added to Workbench.

• Family: the family the sample is connected to (for trio / family analysis).

• Sex: biological sex of the sample, if known.

• HPO terms: how many phenotype terms are logged for the sample.

• Run Date: the date the tertiary analysis workflow was run.

• Workflows: which workflows have been run against the sample, and whether each succeeded or failed.

• Status: the status of the most recent workflow run.

How to use it

1. Select the instrument.

2. Find your sample by name and check that a workflow has succeeded.

3. Open the sample to reach its details page, then open the succeeded run for review. See Opening a sample.

The sample drawer, available throughout the interpreter, carries the sample's details, pedigree, and workflow history with you, so you don't have to return to the Data Page to check provenance.