Sample details

Click a sample on a storage account's samples page to open its sample details page. It gathers the sample's metadata, its files, and the workflow runs that analyzed it.

Custom attributes

If custom attributes have been uploaded for the sample (see Adding sample metadata), a Custom attributes card shows them in a read-only JSON viewer.

• Copy copies the attributes to your clipboard as JSON.

• Clear all removes every custom attribute from the sample. Confirm in the Clear custom attributes dialog. This needs the Manage Samples capability.

Attributes can't be edited on this page. To change them, upload the metadata file for the sample again.

Clearing custom attributes can't be undone. To restore them, upload the sample's metadata file again.

Analysis and ingestion progress

The Analysis section lists the workflow runs for the sample. Expand a run to see its details.

For runs that load variants into the Variant Interpreter, the expanded run shows an ingestion tracker with three steps:

1. Data Ingestion: the ingest workflow reads the run's outputs.

2. Data Registration: the ingested files are registered with Workbench.

3. Data Indexing: the registered data is indexed so it can be queried.

Each step shows whether it's pending, in progress, complete, or failed. Steps after a failure are marked as not run. Hover over a step for details.

If only some files registered, the step shows Partly registered with a count, for example "Partly registered — 18 of 20". Review analysis stays available once some data has registered, even while a later step is still pending.

Investigating a failure

On a failed or partly completed step:

• View error detail (Data Registration and Data Indexing) lists each file that didn't register or index, with its full path and the reason. Use Copy Error to copy the details, for example to send to your administrator.

• View error logs opens the run's logs on the Monitor page.

Retrying or stopping ingestion

You can recover from a failed step without starting over:

Situation	Action	What it does
Data Registration failed or partly completed	Retry registration	Re-registers the already-ingested data. This usually takes seconds.
Data Registration failed or partly completed	Re-run from ingestion instead	Re-runs the whole ingest workflow, not just registration. Confirm in the Re-run from ingestion dialog.
Data Indexing failed	Retry indexing	Retries indexing for the files that didn't reach the index.
Data Ingestion failed	Retry ingestion	Re-runs the ingest workflow from the start.
A step is running	Stop (for example Stop data ingestion)	Marks the step failed. You can retry it afterwards from wherever it stopped.

If a retry can't be started, the reason is shown below the buttons.